Client errors

Author	Message
premier Send message Joined: 30 Dec 05 Posts: 14 Credit: 23,872,868 RAC: 0	Message 76864 - Posted: 23 Jun 2014, 10:44:53 UTC Last modified: 23 Jun 2014, 10:49:53 UTC Hi guys, i am wondering, what's wrong with my PC. Recently i'm having lot of client errors, and I try to figure out what's wrong. Seems to me like it's somthing to hard disk related problem, but i am not sure. I have marked interesting parts: <core_client_version>7.2.42</core_client_version> <![CDATA[ <stderr_txt> [2014- 6-23 1:29:22:] :: BOINC:: Initializing ... ok. [2014- 6-23 1:29:22:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: projects/boinc.bakerlab.org_rosetta/minirosetta_3.52_windows_x86_64.exe -abinitio::fastrelax 1 -ex2aro 1 -frag3 00001.200.3mers -in:file:native 00001.pdb -silent_gz 1 -frag9 00001.200.9mers -out:file:silent default.out -ex1 1 -abinitio::rsd_wt_loop 0.5 -relax::default_repeats 15 -abinitio::use_filters false -abinitio::increase_cycles 10 -abinitio::rsd_wt_helix 0.5 -abinitio::rg_reweight 0.5 -in:file:boinc_wu_zip benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_ploops_42_input_0002_no_lig_fragments_contact_opt_iteration_1_0aeeba3d61a044ac8d3d2107721e4aee_data.zip -out:file:silent default.out -silent_gz -mute all -nstruct 10000 -cpu_run_time 10800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2970556 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_3d2618f.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_ploops_42_input_0002_no_lig_fragments_contact_opt_iteration_1_0aeeba3d61a044ac8d3d2107721e4aee_data.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 WARNING! attempt to create gzipped file ../../projects/boinc.bakerlab.org_rosetta/benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_ploops_42_input_0002_no_lig_fragments_contact_opt_iteration_1_0aeeba3d61a044ac8d3d2107721e4aee_fold_SAVE_ALL_OUT_169893_2693_0_0 failed. ====================================================== DONE :: 1 starting structures 10368.2 cpu seconds This process generated 14 decoys from 14 attempts ====================================================== BOINC :: WS_max 5.27295e+008 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_ploops_42_input_0002_no_lig_fragments_contact_opt_iteration_1_0aeeba3d61a044ac8d3d2107721e4aee_fold_SAVE_ALL_OUT_169893_2693_0_0</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]> and another one: <core_client_version>7.2.42</core_client_version> <![CDATA[ <message> (unknown error) - exit code -1 (0xffffffff) </message> <stderr_txt> [2014- 6-23 5:37:34:] :: BOINC:: Initializing ... ok. [2014- 6-23 5:37:34:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: projects/boinc.bakerlab.org_rosetta/minirosetta_3.52_windows_x86_64.exe -out:file:silent default.out -in:file:s 00001.pdb -frag3 00001.200.3mers -in:file:native 00001.pdb -frag9 00001.200.9mers -silent_gz 1 -ex2aro 1 -relax::default_repeats 15 -in:file:fullatom 1 -run:protocol relax -ex1 1 -in:file:boinc_wu_zip benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_binchen_picked_2_12_0128_contact_opt_iteration_3_8409e15a086f4e0e85ea4ce1db5d01c9_data.zip -out:file:silent default.out -silent_gz -mute all -in:file:native 00001.pdb -in:file:fullatom -in:file:s 00001.pdb -nstruct 10000 -cpu_run_time 10800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2319732 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_3d2618f.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_binchen_picked_2_12_0128_contact_opt_iteration_3_8409e15a086f4e0e85ea4ce1db5d01c9_data.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. [2014- 6-23 7: 6:28:] :: BOINC:: Initializing ... ok. [2014- 6-23 7: 6:28:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: projects/boinc.bakerlab.org_rosetta/minirosetta_3.52_windows_x86_64.exe -out:file:silent default.out -in:file:s 00001.pdb -frag3 00001.200.3mers -in:file:native 00001.pdb -frag9 00001.200.9mers -silent_gz 1 -ex2aro 1 -relax::default_repeats 15 -in:file:fullatom 1 -run:protocol relax -ex1 1 -in:file:boinc_wu_zip benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_binchen_picked_2_12_0128_contact_opt_iteration_3_8409e15a086f4e0e85ea4ce1db5d01c9_data.zip -out:file:silent default.out -silent_gz -mute all -in:file:native 00001.pdb -in:file:fullatom -in:file:s 00001.pdb -nstruct 10000 -cpu_run_time 10800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2319732 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_3d2618f.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_binchen_picked_2_12_0128_contact_opt_iteration_3_8409e15a086f4e0e85ea4ce1db5d01c9_data.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk1_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk2_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk3_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk4_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk5_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk6_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk7_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk8_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk9_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk10_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk11_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk12_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk13_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk14_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk15_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk16_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk17_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk18_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk19_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk20_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk21_fa ... success! Continuing computation from checkpoint: chk_00001_00034_FastRelax__chk22_fa ... success! [2014- 6-23 7:57:30:] :: BOINC:: Initializing ... ok. [2014- 6-23 7:57:30:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: projects/boinc.bakerlab.org_rosetta/minirosetta_3.52_windows_x86_64.exe -out:file:silent default.out -in:file:s 00001.pdb -frag3 00001.200.3mers -in:file:native 00001.pdb -frag9 00001.200.9mers -silent_gz 1 -ex2aro 1 -relax::default_repeats 15 -in:file:fullatom 1 -run:protocol relax -ex1 1 -in:file:boinc_wu_zip benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_binchen_picked_2_12_0128_contact_opt_iteration_3_8409e15a086f4e0e85ea4ce1db5d01c9_data.zip -out:file:silent default.out -silent_gz -mute all -in:file:native 00001.pdb -in:file:fullatom -in:file:s 00001.pdb -nstruct 10000 -cpu_run_time 10800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2319732 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_3d2618f.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_binchen_picked_2_12_0128_contact_opt_iteration_3_8409e15a086f4e0e85ea4ce1db5d01c9_data.zip CreateFile error 32 when trying set file time error: cannot create ./00001.200.9mers error: cannot create ./00001.pdb Setting database description ... Setting up checkpointing ... Setting up graphics native ... ERROR: Cannot open PDB file "00001.pdb" ERROR:: Exit from: ......srccoreimport_poseimport_pose.cc line: 216 </stderr_txt> ]]> and another <core_client_version>7.2.42</core_client_version> <![CDATA[ <stderr_txt> [2014- 6-22 4:52:23:] :: BOINC:: Initializing ... ok. [2014- 6-22 4:52:23:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. command: projects/boinc.bakerlab.org_rosetta/minirosetta_3.52_windows_x86_64.exe -abinitio::fastrelax 1 -ex2aro 1 -frag3 00001.200.3mers -in:file:native 00001.pdb -silent_gz 1 -frag9 00001.200.9mers -out:file:silent default.out -ex1 1 -abinitio::rsd_wt_loop 0.5 -relax::default_repeats 15 -abinitio::use_filters false -abinitio::increase_cycles 10 -abinitio::rsd_wt_helix 0.5 -abinitio::rg_reweight 0.5 -in:file:boinc_wu_zip benchmark_0014_alex_metric_58c8eb0a169e5c49e1cef5331416f2432f6d8260_ploops_42_input_0002_no_lig_fragments_contact_opt_iteration_1_c9a5c0bc028747f194305301d0dfc23b_data.zip -out:file:silent default.out -silent_gz -mute all -nstruct 10000 -cpu_run_time 10800 -checkpoint_interval 120 -database minirosetta_database -in::file::zip minirosetta_database.zip -boinc::watchdog -run::rng mt19937 -constant_seed -jran 2550967 Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_3d2618f.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/benchmark_0014_alex_metric_58c8eb0a169e5c49e1cef5331416f2432f6d8260_ploops_42_input_0002_no_lig_fragments_contact_opt_iteration_1_c9a5c0bc028747f194305301d0dfc23b_data.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 WARNING! attempt to create gzipped file ../../projects/boinc.bakerlab.org_rosetta/benchmark_0014_alex_metric_58c8eb0a169e5c49e1cef5331416f2432f6d8260_ploops_42_input_0002_no_lig_fragments_contact_opt_iteration_1_c9a5c0bc028747f194305301d0dfc23b_fold_SAVE_ALL_OUT_170254_1122_0_0 failed. ====================================================== DONE :: 1 starting structures 10314.1 cpu seconds This process generated 15 decoys from 15 attempts ====================================================== BOINC :: WS_max 5.32865e+008 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>benchmark_0014_alex_metric_58c8eb0a169e5c49e1cef5331416f2432f6d8260_ploops_42_input_0002_no_lig_fragments_contact_opt_iteration_1_c9a5c0bc028747f194305301d0dfc23b_fold_SAVE_ALL_OUT_170254_1122_0_0</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]> I wouldn't bother that if only they were validate errors, but they are marked as client errors. I have also noted, that I've been granted with credits for those tasks. So my question is. Is it really something wrong with my PC or just something wrong with R@H? ID: 76864 · Rating: 0 · rate: / Reply Quote

Murasaki Send message Joined: 20 Apr 06 Posts: 303 Credit: 511,418 RAC: 0	Message 76875 - Posted: 24 Jun 2014, 23:30:01 UTC Several other users have reported recent client and validate errors in the Minirosetta 3.52 thread so it probably isn't your machine (unless you are seeing other problems as well). ID: 76875 · Rating: 0 · rate: / Reply Quote

krypton Volunteer moderator Project developer Project scientist Send message Joined: 16 Nov 11 Posts: 108 Credit: 2,164,309 RAC: 0	Message 76890 - Posted: 27 Jun 2014, 0:57:57 UTC My guess is that the filesystem you are using has a length limit for file names. I know some Windows based machines have this. I'll let the group know, not to submit jobs with such large names. Thank you for reporting the error! ID: 76890 · Rating: 0 · rate: / Reply Quote

premier Send message Joined: 30 Dec 05 Posts: 14 Credit: 23,872,868 RAC: 0	Message 76929 - Posted: 30 Jun 2014, 6:32:28 UTC Last modified: 30 Jun 2014, 6:49:49 UTC I'm operating at Windows 7 64 bit version, and yeah it has 260 byte limit and this could be it. relative path is ../../projects/boinc.bakerlab.org_rosetta/benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_ploops_42_input_0002_no_lig_fragments_contact_opt_iteration_1_0aeeba3d61a044ac8d3d2107721e4aee_fold_SAVE_ALL_OUT_169893_2693_0_0 = 224 chars + 1 <NUL>, but when we replace realative to absolute: C:Program DataBOINCprojects/boinc.bakerlab.org_rosetta/benchmark_0008_master_babd28351e57425d68b32333be5a837fb7cd5818_ploops_42_input_0002_no_lig_fragments_contact_opt_iteration_1_0aeeba3d61a044ac8d3d2107721e4aee_fold_SAVE_ALL_OUT_169893_2693_0_0 it's 249+1 <NUL>, total 250 chars. Here is what i found in network: So it should work, but maybe there is different true name of the file (maybe there is tar.gz at the end? Then it would be 256 chars, still 4 bytes left :) Maybe tehre is something more. Oh and one more thing, according to M$ site: The Windows API has many functions that also have Unicode versions to permit an extended-length path for a maximum total path length of 32,767 characters. This type of path is composed of components separated by backslashes, each up to the value returned in the lpMaximumComponentLength parameter of the GetVolumeInformation function (this value is commonly 255 characters). To specify an extended-length path, use the "\?" prefix. For example, "\?D:very long path". The "\?" prefix can also be used with paths constructed according to the universal naming convention (UNC). To specify such a path using UNC, use the "\?UNC" prefix. For example, "\?UNCservershare", where "server" is the name of the computer and "share" is the name of the shared folder. These prefixes are not used as part of the path itself. They indicate that the path should be passed to the system with minimal modification, which means that you cannot use forward slashes to represent path separators, or a period to represent the current directory, or double dots to represent the parent directory. Because you cannot use the "\?" prefix with a relative path, relative paths are always limited to a total of MAX_PATH characters. I guess we need a client update :) ID: 76929 · Rating: 0 · rate: / Reply Quote

krypton Volunteer moderator Project developer Project scientist Send message Joined: 16 Nov 11 Posts: 108 Credit: 2,164,309 RAC: 0	Message 76941 - Posted: 1 Jul 2014, 5:56:07 UTC Thank you premier! This is very helpful. ID: 76941 · Rating: 0 · rate: / Reply Quote

Monty Send message Joined: 14 Oct 07 Posts: 4 Credit: 146,497 RAC: 0	Message 76961 - Posted: 5 Jul 2014, 16:53:13 UTC Last modified: 5 Jul 2014, 17:24:19 UTC Client errors on tasks 672296503 and 672297344 . Exit status -1073741819 (0xffffffffc0000005) - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x00947DEB write attempt to address 0x00000000 ------------------------ Greetings from Germany ID: 76961 · Rating: 0 · rate: / Reply Quote

Killersocke@rosetta Send message Joined: 13 Nov 06 Posts: 29 Credit: 2,579,125 RAC: 0	Message 76962 - Posted: 5 Jul 2014, 22:40:28 UTC Same in this Tread Minirosetta 3.52 ID: 76962 · Rating: 0 · rate: / Reply Quote