Message boards : Rosetta@home Science : FoldSeek
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![]() Send message Joined: 1 Dec 05 Posts: 1908 Credit: 8,806,253 RAC: 11,637 ![]() |
Another intersting project: FoldSeek Foldseek enables fast and sensitive comparisons of large structure sets. It reaches sensitivities similar to state-of-the-art structural aligners while being at least 20,000 times faster. |
![]() Send message Joined: 1 Dec 05 Posts: 1908 Credit: 8,806,253 RAC: 11,637 ![]() |
Today they released a new version to targhet AlphaFold UniProt Database |
![]() Send message Joined: 1 Dec 05 Posts: 1908 Credit: 8,806,253 RAC: 11,637 ![]() |
Foldseek version 4 is out |
![]() Send message Joined: 1 Dec 05 Posts: 1908 Credit: 8,806,253 RAC: 11,637 ![]() |
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![]() Send message Joined: 1 Dec 05 Posts: 1908 Credit: 8,806,253 RAC: 11,637 ![]() |
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![]() Send message Joined: 1 Dec 05 Posts: 1908 Credit: 8,806,253 RAC: 11,637 ![]() |
Navigate in the AlphaFold cluster with Foldseek |
![]() Send message Joined: 1 Dec 05 Posts: 1908 Credit: 8,806,253 RAC: 11,637 ![]() |
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![]() Send message Joined: 1 Dec 05 Posts: 1908 Credit: 8,806,253 RAC: 11,637 ![]() |
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![]() Send message Joined: 1 Dec 05 Posts: 1908 Credit: 8,806,253 RAC: 11,637 ![]() |
Foldseek 9 is out |
![]() Send message Joined: 1 Dec 05 Posts: 1908 Credit: 8,806,253 RAC: 11,637 ![]() |
Foldseek find similarities in Alphafold DB A new algorithm called FoldSeek (van Kempen et al. 2024) efficiently clustered over 214 million protein structures from the AlphaFold database into only 2.30 million clusters, significantly reducing the data by almost 100 times! You can group the data points together to obtain only the non-repetitive, meaningful representative structures for each group. This reduction is possible due to the intrinsic patterns shared across many protein types. |
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