Message boards : Rosetta@home Science : FoldSeek
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[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1897 Credit: 8,558,506 RAC: 11,793 |
Another intersting project: FoldSeek Foldseek enables fast and sensitive comparisons of large structure sets. It reaches sensitivities similar to state-of-the-art structural aligners while being at least 20,000 times faster. |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1897 Credit: 8,558,506 RAC: 11,793 |
Today they released a new version to targhet AlphaFold UniProt Database |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1897 Credit: 8,558,506 RAC: 11,793 |
Foldseek version 4 is out |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1897 Credit: 8,558,506 RAC: 11,793 |
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[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1897 Credit: 8,558,506 RAC: 11,793 |
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[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1897 Credit: 8,558,506 RAC: 11,793 |
Navigate in the AlphaFold cluster with Foldseek |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1897 Credit: 8,558,506 RAC: 11,793 |
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[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1897 Credit: 8,558,506 RAC: 11,793 |
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[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1897 Credit: 8,558,506 RAC: 11,793 |
Foldseek 9 is out |
[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 1897 Credit: 8,558,506 RAC: 11,793 |
Foldseek find similarities in Alphafold DB A new algorithm called FoldSeek (van Kempen et al. 2024) efficiently clustered over 214 million protein structures from the AlphaFold database into only 2.30 million clusters, significantly reducing the data by almost 100 times! You can group the data points together to obtain only the non-repetitive, meaningful representative structures for each group. This reduction is possible due to the intrinsic patterns shared across many protein types. |
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